Versions Compared

Old Version 137

changes.mady.by.user Unknown User (gary_9@mit.edu)

Saved on

compared with

New Version Current

changes.mady.by.user Unknown User (gary_9@mit.edu)

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.
Comment: Migration of unmigrated content due to installation of a new plugin

...

Toggle Cloak
miRNA Detection

 

 

Neg Ctrl

    • Dummy DNA
    • With Lipofectamine

Neg Ctrl

    • Dummy DNA
    • With Lipofectamine

RESULT: Brief description of experimental outcome (mean transfection efficiency and implications). Link to results page with data analysis.

Quantifying L7ae Repression

GOAL: Quantify the repression of L7ae

34 complete Day 1: Seed cells 35 incomplete Day 2: Transfect hEF1a-rtTA (200.0 ng/uL), TRE-L7ae (200 ng/uL), Wild Type 2x-Kturn eGFP (200 ng/uL), TRE-mKate (200.0 ng/ uL), hEF1a-eBFP (200.0 ng/uL), hEF1a-mKate (200.0 ng/uL), hEF1a-eYFP (200.0 ng/uL), and GG Donor (200 ng/uL) into HEK cells 31 incomplete Day 4: (2 pm): Flow Cytometer

 

DNA Dilution: hEF1a-rtTA (0.60 uL), TRE-L7ae (1.48 uL), Wild Type 2x-Kturn eGFP (1.19 uL), TRE-mKate (1.0 uL), hEF1a-eBFP (0.93 uL), hEF1a-mKate (0.93 uL), hEF1a-eYFP (0.93 uL)

24-WELL PLATE TRANSFECTION MAP:

1. Neg Ctrl

Dummy DNA

With Lipofectamine

2. Neg Ctrl

Dummy DNA

With Lipofectamine

RESULT: Results can be found here

Cloak

L7ae Repression

Attempt #1

GOAL: Test the strength of L7ae

3 complete 7/14/14: Seed cells 22 complete 7/15/14: Transfect MAV1212-hEF1a-eBFP2 (1084.0 ng/uL), Mutant hEF1a-2xKturn-eGFP (551.4 ng/uL) and Wild Type hEF1a-2xKturn-eGFP (287.0 ng/uL) into HEK cells 0 complete 7/17/14 (12 pm): Flow Cytometer

 

  • DNA Dilution: 5 uL MAV1212-hEF1a-eBFP2, 10 uL Mutant Hef1a-2xKturn-eGFP, 20 uL Wild Type Hef1a-2xKturn-eGFP


24-WELL PLATE TRANSFECTION MAP:

(B)1

  • MAV1212-hEF1a-eBFP2

(B)2

  • MAV1212-hEF1a-eBFP2
////////////////////////

(GM)1

  • Mutant Hef1a-2xKturn-eGFP

(GM)2

  • Mutant Hef1a-2xKturn-eGFP

(GM + B)1

  • Mutant Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2

(GM + B)2

  • Mutant Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2

(GM + B + L)1

  • Mutant Hef1a-2xKturn-eGFP
  • Wild Type Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2

(GM + B + L)2

  • Mutant Hef1a-2xKturn-eGFP
  • Wild Type Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2

(GWT)1

  • Wild Type Hef1a-2xKturn-eGFP

(GWT)2

  • Wild Type Hef1a-2xKturn-eGFP


(GWT + B)1

  • Wild Type Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2

(GWT + B)2

  • Wild Type Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2

(GWT + B + L)1

  • Wild Type Hef1a-2xKturn-eGFP
  • Mutant Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2

(GWT + B + L)2

  • Wild Type Hef1a-2xKturn-eGFP
  • Mutant Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2

Neg Ctrl

  • Dummy DNA
  • With Lipofectamine


Neg Ctrl

  • Dummy DNA
  • With Lipofectamine


Neg/Neg Ctrl

  • No DNA
  • No Lipofectamin

Neg/Neg Ctrl

  • No DNA
  • No Lipofectamine
////////////


RESULT: Transfection efficiency ~35%. FACS data is available Inconclusive. No L7ae was added.


Attempt #2

2 complete 7/16/14: Seed cells 1 complete 7/17/14: Transfect MAV1212-hEF1a-eBFP2 (1084.0 ng/uL), Mutant hEF1a-2xKturn-eGFP (551.4 ng/uL) and Wild Type hEF1a-2xKturn-eGFP (287.0 ng/uL), MAV1212-hEF1a-L7ae (1686.4 ng/uL) into HEK cells 7 complete 7/19/14 (10 am): Flow Cytometer

 

  • DNA Dilution: 5 uL MAV1212-hEF1a-eBFP2, 10 uL Mutant Hef1a-2xKturn-eGFP, 20 uL Wild Type Hef1a-2xKturn-eGFP, 3 uL MAV1212-hEF1a-L7ae

24-WELL PLATE TRANSFECTION MAP:

(B)1

  • MAV1212-hEF1a-eBFP2

(B)2

  • MAV1212-hEF1a-eBFP2
////////////////////////

(GM)1

  • Mutant Hef1a-2xKturn-eGFP

(GM)2

  • Mutant Hef1a-2xKturn-eGFP

(GM + B)1

  • Mutant Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2

(GM + B)2

  • Mutant Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2

(GM + B + L)1

  • Mutant Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2
  • MAV1212-hEF1a-L7ae

(GM + B + L)2

  • Mutant Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2
  • MAV1212-hEFa-L7ae

(GWT)1

  • Wild Type Hef1a-2xKturn-eGFP

(GWT)2

  • Wild Type Hef1a-2xKturn-eGFP


(GWT + B)1

  • Wild Type Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2

(GWT + B)2

  • Wild Type Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2

(GWT + B + L)1

  • Wild Type Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2
  • MAV1212-hEFa1-L7ae

(GWT + B + L)2

  • Wild Type Hef1a-2xKturn-eGFP
  • MAV1212-hEF1a-eBFP2
  • MAV1212-hEF1a-L7ae

Neg Ctrl

  • Dummy DNA
  • With Lipofectamine


Neg Ctrl

  • Dummy DNA
  • With Lipofectamine


Neg/Neg Ctrl

  • No DNA
  • No Lipofectamin

Neg/Neg Ctrl

  • No DNA
  • No Lipofectamine
////////////


RESULT: Transfection efficiency ~35%. FACS data is available : Inconclusive: Too much DNA in each well.


Attempt #3

17 complete 7/24/14: Seed cells 18 complete 7/25/14: Transfect MAV1212-hEF1a-eBFP2, Mutant hEF1a-2xKturn-eGFP, Wild Type hEF1a-2xKturn-eGFP, MAV1212-hEF1a-L7ae, hEF1a-PirB (dummy DNA) all at ~500 ng/uL into HEK cells 19 complete 7/27/14 (10 am): Flow Cytometry
  • DNA Dilution: MAV1212-hEF1a-eBFP2 (0.47 uL), Wild Type CAG-2xKturn-eGFP (0.96 uL), Mutant CAG-2xKturn-eGFP (0.96 uL), MAV1212-hEF1a-L7ae (0.71 uL), hEF1a-PirB (to 1 ug)

24-WELL PLATE TRANSFECTION MAP:

1. (B)1

MAV1212-hEF1a-eBFP2 (1.0 fmole)

hEF1a-PirB (1.5 fmole = 1.60 uL)

2. (B)2

MAV1212-hEF1a-eBFP2 (1.0 fmole)

hEF1a-PirB (1.5 fmole = 1.60 uL)

////////////////////////

3. (GWT + B)1

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-2xKturn-eGFP (1.5 fmoles)

hEF1a-PirB (1.0 fmole = 0.99 uL)

4. (GWT + B)2

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-2xKturn-eGFP (1.5 fmoles)

hEF1a-PirB (1.0 fmole = 0.99 uL)

5. (GWT + B + L)1

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-2xKturn-eGFP (1.5 fmoles)

MAV1212-hEF1a-L7ae (1.5 fmoles)

6. (GWT + B + L)2

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-2xKturn-eGFP (1.5 fmoles)

MAV1212-hEF1a-L7ae (1.5 fmoles)

////////////

7. (GM + B)1

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Multant CAG-2xKturn-eGFP (1.5 fmoles)

hEF1a-PirB (1.0 fmole = 0.99 uL)

8. (GM + B)2

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Multant CAG-2xKturn-eGFP (1.5 fmoles)

hEF1a-PirB (1.0 fmole = 0.99 uL)

9. (GM + B + L)1

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Multant CAG-2xKturn-eGFP (1.5 fmoles)

MAV1212-hEF1a-L7ae (1.5 fmoles)

10. (GM + B + L)2

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Multant CAG-2xKturn-eGFP (1.5 fmoles)

MAV1212-hEF1a-L7ae (1.5 fmoles)

////////////

11. Neg Ctrl

hEF1a-PirB (3.2 fmoles = 2.05 uL)

With Lipofectamine


12. Neg Ctrl

hEF1a-PirB (3.2 fmoles = 2.05 uL)

With Lipofectamine


13. Neg/Neg Ctrl

No DNA

No Lipofectamine

14. Neg/Neg Ctrl

No DNA

No Lipofectamine

////////////


RESULT: Transfection efficiency ___%. FACS data Data is available

TAL14 Repression L7ae Tuning

GOAL: Test the strength sensitivity of TAL14L7ae repression

14 complete 7/25/1421 complete Day One: Seed cells 15 complete 7/26/14 28 complete Day Two: Transfect MAV1212-hEF1a-eBFP2, TAL14-mKate, Wild Type hEF1a-2xKturn-eGFP, MAV1212-hEF1a-GAL4VP16L7ae, pEXPR: hEF1a-TAL14, and hEF1a-PirB rtTA (169.0 ng/uL), GG-Donor (dummy DNA) all at ~500 ng/uL into HEK cells 16 complete 7/28/14 (4 pm 29 complete Day Three: DOX Induction 30 complete Day Four (___ am): Flow Cytometry 
  • DNA Dilution: MAV1212-hEF1a-eBFP2 (0.47 uL), TAL14-mKate Wild Type CAG-2xKturn-eGFP (0.62 96 uL), hEF1aMAV1212-TRE-GAL4VP16 L7ae (0.72 89 uL), pEXPR: hEF1a-TAL14 (___ rtTA (0.27 uL), Dummy DNA GG-Donor (to 1 ug)

24-WELL PLATE TRANSFECTION MAP:

GOAL: Test the sensitivity of L7ae repression

21 complete Day One: Seed cells 28 complete Day Two: Transfect  (B)125 fmoles 076 (B)225 fmoles 076

4. (B + R)1

MAV1212-hEF1a-UASTAL14mKate 20 fmoles 61 5. (B + R)2UASTAL14mKate 20 fmoles 61 7. (B + R + GAL)1UASTAL14mKate hEF1aGal4VP16 8. (B + R + GAL)2UASTAL14mKate hEF1aGal4VP16 10. (B + R + GAL)1UASTAL14mKate hEF1aGal4VP16 TAL14 (1.5 fmoles)11. (B + R + GAL)2UASTAL14mKate

hEF1a-Gal4VP16 (1.5 fmoles)

hEF1a-TAL14

1.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Dummy DNA (

1.

75 fmole =

1.

62 uL)

2.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Dummy DNA (

1.

75 fmole =

1.

62 uL)

////////////

//////

 

3. Neg Ctrl

Dummy DNA (3.2 fmoles = 2.05 uL)

With Lipofectamine

3.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-

2xKturn-

eGFP (1.5 fmoles)

Dummy DNA (

0.

75 fmole = 0.

70 uL)

4.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-

2xKturn-

eGFP (1.5 fmoles)

Dummy DNA (

0.

75 fmole = 0.

70 uL)

 

 

//////

 

 

//////

//////

6. Neg Ctrl

Dummy DNA (3.2 fmoles = 2.05 uL)

With Lipofectamine

5.

pEXPR: hEF1a-rtTA

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-

2xKturn-

eGFP (1.5 fmoles)

MAV1212-TRE-

L7ae (1.5 fmoles)

0 uM DOX

6.

pEXPR: hEF1a-rtTA

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-

2xKturn-

eGFP (1.5 fmoles)

MAV1212-TRE-

L7ae (1.5 fmoles)

//////

//////

 

//////

9. Neg/Neg Ctrl

No DNA

No Lipofectamine

1X DOX

7.

pEXPR: hEF1a-rtTA

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-

2xKturn-

eGFP (1.5 fmoles)

MAV1212-TRE-

L7ae (1.5 fmoles)

10X DOX

8.

pEXPR: hEF1a-

rtTA

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-

2xKturn-

eGFP (1.5 fmoles)

MAV1212-TRE-L7ae (1.5 fmoles)

//////

////////////12. Neg/Neg Ctrl

No DNA

No Lipofectamine

 Tuning L7ae Repression

100X DOX

9.

pEXPR: hEF1a-rtTA

MAV1212-hEF1a-eBFP2

,

(1.0 fmole)

Wild Type

hEF1a

CAG-2xKturn-eGFP

,

(1.5 fmoles)

MAV1212-

hEF1a

TRE-L7ae

,

(1.5 fmoles)

1000X DOX

10.

pEXPR: hEF1a-rtTA

(169.0 ng/uL), GG-Donor (dummy DNA) all at ~500 ng/uL into HEK cells 29 complete Day Three: DOX Induction 30 complete Day Four (___ am): Flow Cytometry

DNA Dilution:

MAV1212-hEF1a-eBFP2 (1.0

.47 uL

fmole)

,

Wild Type CAG-2xKturn-eGFP (

0

1.

96 uL

5 fmoles)

,

MAV1212-TRE-L7ae (

0

1.

89 uL), pEXPR: hEF1a-rtTA (0.27 uL), GG-Donor (to 1 ug)

5 fmoles)

2000X DOX

////////////////////////////////////

11.

24-WELL PLATE TRANSFECTION MAP:

1.

MAV1212-hEF1a-eBFP2 (1.0 fmole).75 fmole = 1.62

2.

MAV1212-hEF1a-eBFP2 (1.0 fmole).75 fmole = 1.62  

 

11.

Dummy DNA (1 ug = ___ uL)

With Lipofectamine

12.

Dummy DNA (1 ug = ___ uL)

With Lipofectamine

Dummy DNA (1

ug = ___ uL)

With Lipofectamine


12.

Dummy DNA (1

ug = ___ uL)

3.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-2xKturn-eGFP (1.5 fmoles)

Dummy DNA (0.75 fmole = 0.70 uL)

4.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-2xKturn-eGFP (1.5 fmoles)

Dummy DNA (0.75 fmole = 0.70 uL)

With Lipofectamine


13.

No DNA

No Lipofectamine

14.

No DNA

No Lipofectamine

 

//////

 

//////

5.

pEXPR: hEF1a-rtTA

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-2xKturn-eGFP (1.5 fmoles)

MAV1212-TRE-L7ae (1.5 fmoles)

0 uM DOX

6.

pEXPR: hEF1a-rtTA

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-2xKturn-eGFP (1.5 fmoles)

MAV1212-TRE-L7ae (1.5 fmoles)

1X DOX

7.

pEXPR: hEF1a-rtTA

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-2xKturn-eGFP (1.5 fmoles)

MAV1212-TRE-L7ae (1.5 fmoles)

10X DOX

8.

pEXPR: hEF1a-rtTA

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-2xKturn-eGFP (1.5 fmoles)

MAV1212-TRE-L7ae (1.5 fmoles)

100X DOX

9.

pEXPR: hEF1a-rtTA

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-2xKturn-eGFP (1.5 fmoles)

MAV1212-TRE-L7ae (1.5 fmoles)

1000X DOX

10.

pEXPR: hEF1a-rtTA

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Wild Type CAG-2xKturn-eGFP (1.5 fmoles)

MAV1212-TRE-L7ae (1.5 fmoles)

2000X DOX

////////////////////////////////////

13.

No DNA

No Lipofectamine

14.

No DNA

No Lipofectamine

 

//////

 

//////

RESULT: Brief description of experimental outcome (mean transfection efficiency and implications). Link to results page with data analysis.

 Tuning TAL14 Repression

GOAL: Determine how much TAL14 is needed to repress TAL14-UAS-mKate

26 complete Day One: Seed cells 27 complete Day Two: Transfect MAV1212-hEF1a-eBFP2, TAL14-mKate, hEF1a-GAL4VP16, hEF1a-TAL14, and hEF1a-PirB (dummy DNA) at ~500 ng/uL into HEK cells 25 complete Day Four (12:30 pm): Flow Cytometry

 

  • DNA Dilution: MAV1212-hEF1a-eBFP2 (0.47 uL), TAL14-mKate (0.62 uL), hEF1a-GAL4VP16 (0.72 uL), hEF1a-TAL14 (0.22 uL = 1 fmol), Dummy DNA (to 1 ug)

24-WELL PLATE TRANSFECTION MAP:

1. 

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Dummy DNA (1.75 fmoles = 4.06 uL)

2. 

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Dummy DNA (1.75 fmoles = 04.06 uL)

3.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

Dummy DNA (1.0 fmoles = 2.32 uL)

4.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

Dummy DNA (1.0 fmoles = 2.32 uL)

5.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.5 fmoles)

Dummy DNA (0.75 fmoles = 1.74 uL)

6.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.5 fmoles)

Dummy DNA (0.75 fmoles = 1.74 uL)

7.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (1.0 fmoles)

8.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (1.5 fmoles)

9.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (2.0 fmoles)

10.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (2.5 fmoles)

11.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (3.0 fmoles)

12.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (3.5 fmoles)

13.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (4.0 fmoles)

14.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (4.5 fmoles)

15.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (5.0 fmoles)

16.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (10.0 fmoles)

17.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (15.0 fmoles)

18.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (20.0 fmoles)

19.

Dummy DNA (3.2 fmoles = 2.05 uL)

With Lipofectamine

20.

Dummy DNA (3.2 fmoles = 2.05 uL)

With Lipofectamine

21.

No DNA

No Lipofectamine

22.

No DNA

No Lipofectamine

  

RESULT: Brief description of experimental outcome (mean transfection efficiency and implications). Link to results page with data analysis.

L7ae Sensors (without siRNA)


RESULT:Transfection efficiency ___%. Data can be found .

 L7ae Quantification

GOAL: Use TASBE tools to quantify the repression of L7ae

32 complete 8/7/14: Seed cells 9 complete 8/8/14: Transfect hEF1a-rtTA (200.0 ng/uL), TRE-L7ae (200 ng/uL), Wild Type 2x-Kturn eGFP (200 ng/uL), TRE-mKate (200.0 ng/ uL), hEF1a-eBFP (200.0 ng/uL), hEF1a-mKate (200.0 ng/uL), hEF1a-eYFP (200.0 ng/uL), and GG Donor (200 ng/uL) into HEK cells 31 complete 8/10/14: (2 pm): Flow Cytometer

 

  • DNA Dilution: hEF1a-rtTA (0.60 uL), TRE-L7ae (1.48 uL), Wild Type 2x-Kturn eGFP (1.19 uL), TRE-mKate (1.0 uL), hEF1a-eBFP (0.93 uL), hEF1a-mKate (0.93 uL), hEF1a-eYFP (0.93 uL)

24-WELL PLATE TRANSFECTION MAP:

1. Neg Ctrl

Dummy DNA

With Lipofectamine


2. Neg Ctrl

Dummy DNA

With Lipofectamine


3. Neg/Neg Ctrl

No DNA

No Lipofectamine

4. Neg/Neg Ctrl

No DNA

No Lipofectamine

  

5.

pEXPR: hEF1a-eYFP (1.0 fmoles)

Dummy DNA (1.5 fmoles = 4.4 uL)

 

6.

pEXPR: hEF1a-mKate (1.0 fmoles)

Dummy DNA (1.5 fmoles = 4.4 uL)

7.

pEXPR: hEF1a-eBFP (1.0 fmoles)

Dummy DNA (1.5 fmoles = 4.4 uL)

8.

pEXPR: hEF1a-eYFP (1.0 fmoles)

pEXPR: hEF1a-mKate (1.0 fmoles)

pEXPR: hEF1a-eBFP (1.0 fmoles)

Dummy DNA (0.75 fmoles = 2.2 uL)

9.

hEF1a-eBFP2 (0.5 fmole)

Wild Type CAG-2xKturn-eGFP (1.0 fmoles)

Dummy DNA (1.5 fmoles = 2.4 uL)

 

      

10.

pEXPR: hEF1a-rtTA (1.0 fmoles)

hEF1a-eBFP2 (0.5 fmole)

Wild Type CAG-2xKturn-eGFP (1.0 fmoles)

MAV1212-TRE-L7ae (1.0 fmoles)

pEXPR: TRE-mKate (1.0 fmoles)

0 uM DOX

11.

pEXPR: hEF1a-rtTA (1.0 fmoles)

hEF1a-eBFP2 (0.5 fmole)

Wild Type CAG-2xKturn-eGFP (1.0 fmoles)

MAV1212-TRE-L7ae (1.0 fmoles)

pEXPR: TRE-mKate (1.0 fmoles)

1X DOX

12.

pEXPR: hEF1a-rtTA 1.0 fmoles)

hEF1a-eBFP2 (0.5 fmole)

Wild Type CAG-2xKturn-eGFP (1.0 fmoles)

MAV1212-TRE-L7ae (1.0 fmoles)

pEXPR: TRE-mKate (1.0 fmoles)

10X DOX

13.

pEXPR: hEF1a-rtTA (1.0 fmoles)

hEF1a-eBFP2 (0.5 fmole)

Wild Type CAG-2xKturn-eGFP (1.0 fmoles)

MAV1212-TRE-L7ae (1.0 fmoles)

pEXPR: TRE-mKate (1.0 fmoles)

100X DOX

14.

pEXPR: hEF1a-rtTA (1.0 fmoles)

hEF1a-eBFP2 (0.5 fmole)

Wild Type CAG-2xKturn-eGFP (1.0 fmoles)

MAV1212-TRE-L7ae (1.0 fmoles)

pEXPR: TRE-mKate (1.0 fmoles)

1000X DOX

15.

pEXPR: hEF1a-rtTA (1.0 fmoles)

hEF1a-eBFP2 (0.5 fmole)

Wild Type CAG-2xKturn-eGFP (1.0 fmoles)

MAV1212-TRE-L7ae (1.0 fmoles)

pEXPR: TRE-mKate (1.0 fmoles)

2000X DOX


RESULT: Transfection efficiency ___%. Data can be found

 L7ae Sensors (without siRNA)

GOAL: Test the sensors in absence of siRNA

10 complete 8.11.14: Seed cells 11 complete 8.12.14: Transfect 1 fmole of Low Sensor miR-144, Low Sensor miR-181c, High Sensor miR-30d, High Sensor miR-146a, High Sensor 125b, and High Sensor let-7f and 0.5 fmoles of pEXPR: hEF1a-mKate all at 200 ng/uL into HEK cells in addition to Dummy DNA (GG Donor) to fill the wells to 1 ug 12 complete 8.14.14: (4 pm): Flow Cytometer

 

  • DNA Dilution: hEF1a-mKate (0.46 uL), Wild Type Kturn-eGFP (1.19 uL), Low Sensor miR-144 (1.29 uL),Low Sensor miR-181c (1.29 uL), High Sensor miR-30d (1.37 uL), High Sensor miR-146a (1.37 uL), High Sensor 125b (1.37 uL), High Sensor let-7f (1.37 uL)


24-WELL PLATE TRANSFECTION MAP:

 

1. miR-144

pEXPR: hEF1a-mKate

Low Sensor miR-144

Dummy DNA (2.9 uL = 1 fmoles)

2. miR-181c

pEXPR: hEF1a-mKate 

Low Sensor miR-181c

Dummy DNA (2.9 uL = 1 fmoles)

3. miR-30d

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor miR-30d

Dummy DNA (2.2 uL = 0.75 fmoles)

4. miR-146a

pEXPR: hEF1a-mKate 

Wild Type CAG-2xKturn-eGFP

High Sensor miR-146a

Dummy DNA (2.2 uL = 0.75 fmoles)

5. miR-125b

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor miR-125b

Dummy DNA (2.2 uL = 0.75 fmoles)

6. let-7f

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor let-7f

Dummy DNA (2.2 uL = 0.75 fmoles)

1. miR-144

pEXPR: hEF1a-mKate

Low Sensor miR-144

Dummy DNA (2.9 uL = 1 fmoles)

2. miR-181c

pEXPR: hEF1a-mKate 

Low Sensor miR-181c

Dummy DNA (2.9 uL = 1 fmoles)

3. miR-30d

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor miR-30d

Dummy DNA (2.2 uL = 0.75 fmoles)

4. miR-146a

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor miR-146a

Dummy DNA (2.2 uL = 0.75 fmoles)

5. miR-125b

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor miR-125b

Dummy DNA (2.2 uL = 0.75 fmoles)

6. let-7f

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor let-7f (

Dummy DNA (2.2 uL = 0.75 fmoles)

//////

//////

////////////////////////

13.

pEXPR: hEF1a-mKate

Dummy DNA (5.1uL = 1.75 fmoles)

13.

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP (1.5 fmoles)

Dummy DNA (3.6 uL = 1.25 fmoles)

19.

Dummy DNA

With Lipofectamine

20.

Dummy DNA

With Lipofectamine

21.

No DNA

No Lipofectamine

22.

No DNA

No Lipofectamine


 

RESULT: Transfection efficiency ___%. Data can be found .

 L7ae Sensors (with siRNA)

GOAL: Test the sensors in the presence of siRNA

-1 incomplete 33 complete 8.12.14: Seed cells 34 complete 8.13.14: Transfect 1 fmole of Low Sensor miR-144, Low Sensor miR-181c, High Sensor miR-30d, High Sensor miR-146a, High Sensor 125b, and High Sensor let-7f and 0.5 fmoles of pEXPR: hEF1a-mKate all at 200 ng/uL into HEK cells in addition to Dummy DNA (GG Donor) to fill the wells to 1 ug. 35 complete 8.15.14: (4 pm): Flow Cytometer
  • DNA Dilution: hEF1a-mKate (0.46 uL), Wild Type Kturn-eGFP (1.19 uL), Low Sensor miR-144 (1.29 uL),Low Sensor miR-181c (1.29 uL), High Sensor miR-30d (1.37 uL), High Sensor miR-146a (1.37 uL), High Sensor 125b (1.37 uL), High Sensor let-7f (1.37 uL), 5 uL Mature 144, 5 uL Mature 181c, 5 uL Mature 30d, 5 uL Mature 146a, 5 uL Mature 125b and 5 uL Mature let-7f

GOAL: Test the sensors in absence of siRNA

10 complete 7/26/14: Seed cells 11 incomplete 7/27/14: Transfect Low Sensor miR-144 (708.2 ng/uL), Low Sensor miR-181c (628.1 ng/uL), High Sensor miR-30d (1046.2 ng/uL), High Sensor miR-146a (828.8 ng/uL), High Sensor 125b (1159.5 ng/uL) and High Sensor let-7f (889.6 ng/uL) into HEK cells 12 incomplete 7/29/14: (4 pm): Flow Cytometer

 

  • DNA Dilution: Low Sensor miR-144 (___ uL),Low Sensor miR-181c (___ uL), High Sensor miR-30d (___ uL), High Sensor miR-146a (___ uL), High Sensor 125b (___ uL), High Sensor let-7f (___ uL)


24-WELL PLATE TRANSFECTION MAP:

.5 (1.5 (1.5 High (1.5 (1.5 7.5 8(1.5 fmoles)9(1.5 10(1.5 11(1.5 12(1.5 Neg Ctrl32 fmoles 205 uL)

With Lipofectamine

Neg Ctrl2 fmoles 205 uL

Neg/Neg Ctrl

No No Neg/Neg Ctrl

1. miR-144

pEXPR: hEF1a-mKate

Low Sensor miR-144

siRNA-144

Dummy DNA (2.9 uL = 1 fmoles)

2. miR-181c

pEXPR: hEF1a-mKate 

Low Sensor miR-181c

siRNA-181c

Dummy DNA (2.9 uL = 1

fmoles)

3. miR-30d

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor miR-30d

siRNA-30d

Dummy DNA (2.2 uL = 0.75 fmoles)

4. miR-146a

pEXPR: hEF1a-mKate 

Wild Type CAG-2xKturn-eGFP

High Sensor miR-146a

siRNA-146a

Dummy DNA (2.2 uL = 0.75 fmoles)

5. miR-125b

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor miR-125b

siRNA-125b

Dummy DNA (2.2 uL = 0.75 fmoles)

6. let-7f

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor let-7f

siRNA-7f

Dummy DNA (2.2 uL = 0.75 fmoles)

1. miR-144

pEXPR: hEF1a-mKate

Low Sensor miR-144

siRNA-144

Dummy DNA (2.9 uL = 1

fmoles)

2. miR-181c

pEXPR: hEF1a-mKate 

Low Sensor miR-181c

siRNA-181c

Dummy DNA (2.9 uL = 1 fmoles)

3. miR-30d

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor miR-30d

siRNA-30d

Dummy DNA (2.2 uL = 0.75 fmoles)

4. miR-146a

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor miR-146a

siRNA-46a

Dummy DNA (2.2 uL = 0.75 fmoles)

5. miR-125b

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor miR-125b

siRNA-125b

Dummy DNA (2.2 uL = 0.75 fmoles)

6. let-7f

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor let-7f

siRNA-7f

Dummy DNA (2.2 uL = 0.75 fmoles)

//////

//////

////////////////////////

13.

pEXPR: hEF1a-mKate

Dummy DNA (

5.

1uL =

1.

75 fmoles)

13.

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP (1.5 fmoles)

Dummy DNA (3.

6 uL =

1.

25 fmoles)

19.

Dummy DNA

With Lipofectamine

20.

Dummy

DNA

With Lipofectamine

21.

No DNA

No Lipofectamine

 

//////

 

//////

22.

No DNA

No Lipofectamine



RESULT: Transfection efficiency ___%. Data can be found RESULT: Brief description of experimental outcome (mean transfection efficiency and implications). Link to results page with data analysis.

L7ae Sensors (with and without siRNA)

GOAL: Test the sensors in the presence and absence of siRNA

13 -1 incomplete 14 incomplete Day 1: Seed cells 9 15 incomplete Day 2: Transfect 1 fmole of Low Sensor miR-144 (708.2 ng/uL), Low Sensor , Low Sensor miR-181c (628.1 ng/uL), High Sensor miR-30d(1046.2 ng/uL), High Sensor miR-146a (828.8 ng/uL), High Sensor 125b (1159.5 ng/uL), , and High Sensor let-7f (889.6 ng/uL), Mature 144 (___ ng/uL), Mature 181c (___ ng/uL), Mature 30d (___ ng/uL), Mature 146a (___ ng/uL), Mature 125b (___ ng/uL) and Mature let-7f (___ ng/uL) into HEK cells 20 incomplete Day 4: (2 pm): Flow Cytometer

 

  • DNA Dilution: ___ uL Low Sensor miR-144, ___ uL Low Sensor miR-181c, ___ uL High Sensor miR-30d, ___ uL High Sensor miR-146a, ___ uL High Sensor 125b, ___ uL High Sensor let-7f , ___ uL Mature 144, ___ uL Mature 181c, ___ uL Mature 30d, ___ uL Mature 146a, ___ uL Mature 125b and ___ uL Mature let-7f

24-WELL PLATE TRANSFECTION MAP:

144

    • Low Sensor miR-144
    • Mature 144

 

    • Low Sensor miR-181c
    • Mature 181c

 

    • High Sensor miR-30d
    • Mature 30d

 

    • High Sensor miR-146a
    • Mature 146a

 

    • High Sensor miR-125b
    • Mature 125b

 

    • High Sensor let-7f
    • Mature let-7f

 

    • Low Sensor miR-144
    • Mature 144

 

    • Low Sensor miR-181c
    • Mature 181c

 

    • High Sensor miR-30d
    • Mature 30d

 

    • High Sensor miR-146a
    • Mature 146a

 

    • High Sensor miR-125b
    • Mature 125b

 

    • High Sensor let-7f
    • Mature let-7f

//////

//////

////////////////////////

Neg/Neg Ctrl

    • No DNA
    • No Lipofectamine

Neg/Neg Ctrl

    • No DNA
    • No Lipofectamine

 

//////

 

//////

3. Neg/Neg Ctrl

No DNA

No Lipofectamine

4. Neg/Neg Ctrl

No DNA

No Lipofectamine

  

5.

pEXPR: hEF1a-eYFP (1.0 fmoles)

Dummy DNA (1.5 fmoles = 4.4 uL)

 

6.

pEXPR: hEF1a-mKate (1.0 fmoles)

Dummy DNA (1.5 fmoles = 4.4 uL)

7.

pEXPR: hEF1a-eBFP (1.0 fmoles)

Dummy DNA (1.5 fmoles = 4.4 uL)

8.

pEXPR: hEF1a-eYFP (1.0 fmoles)

pEXPR: hEF1a-mKate (1.0 fmoles)

pEXPR: hEF1a-eBFP (1.0 fmoles)

Dummy DNA (0.75 fmoles = 2.2 uL)

9.

hEF1a-eBFP2 (0.5 fmole)

Wild Type CAG-2xKturn-eGFP (1.0 fmoles)

Dummy DNA (1.5 fmoles = 2.4 uL)

 

      

10.

pEXPR: hEF1a-rtTA (1.0 fmoles)

hEF1a-eBFP2 (0.5 fmole)

Wild Type CAG-2xKturn-eGFP (1.0 fmoles)

MAV1212-TRE-L7ae (1.0 fmoles)

pEXPR: TRE-mKate (1.0 fmoles)

0 uM DOX

11.

pEXPR: hEF1a-rtTA (1.0 fmoles)

hEF1a-eBFP2 (0.5 fmole)

Wild Type CAG-2xKturn-eGFP (1.0 fmoles)

MAV1212-TRE-L7ae (1.0 fmoles)

pEXPR: TRE-mKate (1.0 fmoles)

1X DOX

12.

pEXPR: hEF1a-rtTA 1.0 fmoles)

hEF1a-eBFP2 (0.5 fmole)

Wild Type CAG-2xKturn-eGFP (1.0 fmoles)

MAV1212-TRE-L7ae (1.0 fmoles)

pEXPR: TRE-mKate (1.0 fmoles)

10X DOX

13.

pEXPR: hEF1a-rtTA (1.0 fmoles)

hEF1a-eBFP2 (0.5 fmole)

Wild Type CAG-2xKturn-eGFP (1.0 fmoles)

MAV1212-TRE-L7ae (1.0 fmoles)

pEXPR: TRE-mKate (1.0 fmoles)

100X DOX

14.

pEXPR: hEF1a-rtTA (1.0 fmoles)

hEF1a-eBFP2 (0.5 fmole)

Wild Type CAG-2xKturn-eGFP (1.0 fmoles)

MAV1212-TRE-L7ae (1.0 fmoles)

pEXPR: TRE-mKate (1.0 fmoles)

1000X DOX

15.

pEXPR: hEF1a-rtTA (1.0 fmoles)

hEF1a-eBFP2 (05 fmole)

Wild Type CAG-2xKturn-eGFP (1.0 fmoles)

MAV1212-TRE-L7ae (1.0 fmoles)

pEXPR: TRE-mKate (1.0 fmoles)

2000X DOX

Toggle Cloak
Treatment

and 0.5 fmoles of pEXPR: hEF1a-mKate all at 200 ng/uL into HEK cells in addition to Dummy DNA (GG Donor) to fill the wells to 1 ug. 16 incomplete Day 4: (___ pm): Flow Cytometer
  • DNA Dilution: hEF1a-mKate (0.46 uL), Wild Type Kturn-eGFP (1.60 uL), Low Sensor miR-144 (1.29 uL),Low Sensor miR-181c (1.39 uL), High Sensor miR-30d (1.01 uL), High Sensor miR-146a (1.16 uL), High Sensor 125b (1.47 uL), High Sensor let-7f (1.37 uL), 5 uL Mature 144, 5 uL Mature 181c, 5 uL Mature 30d, 5 uL Mature 146a, 5 uL Mature 125b and 5 uL Mature let-7f


24-WELL PLATE TRANSFECTION MAP:

1. miR-144

pEXPR: hEF1a-mKate

Low Sensor miR-144

Dummy DNA (2.9 uL = 1 fmoles)

2. miR-181c

pEXPR: hEF1a-mKate 

Low Sensor miR-181c

Dummy DNA (2.9 uL = 1 fmoles)

3. miR-30d

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor miR-30d

Dummy DNA (2.2 uL = 0.75 fmoles)

4. miR-146a

pEXPR: hEF1a-mKate 

Wild Type CAG-2xKturn-eGFP

High Sensor miR-146a

Dummy DNA (2.2 uL = 0.75 fmoles)

5. miR-125b

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor miR-125b

Dummy DNA (2.2 uL = 0.75 fmoles)

6. let-7f

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor let-7f

Dummy DNA (2.2 uL = 0.75 fmoles)

1. miR-144

pEXPR: hEF1a-mKate

Low Sensor miR-144

siRNA-144

Dummy DNA (2.9 uL = 1 fmoles)

2. miR-181c

pEXPR: hEF1a-mKate 

Low Sensor miR-181c

siRNA-181c

Dummy DNA (2.9 uL = 1 fmoles)

3. miR-30d

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor miR-30d

siRNA-30d

Dummy DNA (2.2 uL = 0.75 fmoles)

4. miR-146a

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor miR-146a

siRNA-146a

Dummy DNA (2.2 uL = 0.75 fmoles)

5. miR-125b

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor miR-125b

siRNA-125b

Dummy DNA (2.2 uL = 0.75 fmoles)

6. let-7f

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP

High Sensor let-7f

siRNA-7f

Dummy DNA (2.2 uL = 0.75 fmoles)

//////

//////

////////////////////////

13.

pEXPR: hEF1a-mKate

Dummy DNA (5.1uL = 1.75 fmoles)

13.

pEXPR: hEF1a-mKate

Wild Type CAG-2xKturn-eGFP (1.5 fmoles)

Dummy DNA (3.6 uL = 1.25 fmoles)

19.

Dummy DNA

With Lipofectamine

20.

Dummy DNA

With Lipofectamine

21.

No DNA

No Lipofectamine

22.

No DNA

No Lipofectamine



RESULT: Transfection efficiency ___%. Data can be found .


 L7ae Sensors (Multi Input)

GOAL: Test the sensors in the presence and absence of siRNA

-1 incomplete 20 complete 9.23.14: Seed cells 42 complete 9.24.14: Transfect 1 fmole of Low Sensor miR-144, High Sensor miR-30d, 0.5 fmoles pEXPR: hEF1a-mKate all at 200 ng/uL into HEK cells in addition to Dummy DNA (GG Donor) to fill the wells to 1 ug. 43 complete 9.26.14: (___ pm): Flow Cytometry
  • DNA Dilution: hEF1a-mKate (0.46 uL), Wild Type Kturn-eGFP (1.19 uL), Low Sensor miR-144 (1.29 uL),High Sensor miR-30d, 5 uL Mature 144, 5 uL Mature 30d


24-WELL PLATE TRANSFECTION MAP:

 

 

1.

Untransfected

 

2.

pEXPR: hEF1a-mKate 

Low Sensor miR-144c

Dummy DNA (2.9 uL = 1 fmoles)

 

 

//////



//////



//////



//////

3.

pEXPR: hEF1a-mKate

Low Sensor miR-144

Dummy DNA (2.9 uL = 1 fmoles)

4.

pEXPR: hEF1a-mKate 

High Sensor miR-30d

Dummy DNA (2.9 uL = 1 fmoles)5

5.

pEXPR: hEF1a-mKate

Low Sensor miR-144

High Sensor miR-30d

Wild Type CAG-2xKturn-eGFP

6.

pEXPR: hEF1a-mKate

Low Sensor miR-144

High Sensor miR-30d

Wild Type CAG-2xKturn-eGFP

siRNA-30d

7.

pEXPR: hEF1a-mKate

Low Sensor miR-144

High Sensor miR-30d

Wild Type CAG-2xKturn-eGFP

siRNA-144

8.

pEXPR: hEF1a-mKate

Low Sensor miR-144

High Sensor miR-30d

Wild Type CAG-2xKturn-eGFP

siRNA-30d

siRNA-144

//////

9.

pEXPR: hEF1a-mKate 

High Sensor miR-125b

Dummy DNA (2.9 uL = 1 fmoles)5

10.

pEXPR: hEF1a-mKate

Low Sensor miR-125b

High Sensor miR-30d

Wild Type CAG-2xKturn-eGFP

11.

pEXPR: hEF1a-mKate

Low Sensor miR-125b

High Sensor miR-30d

Wild Type CAG-2xKturn-eGFP

siRNA-30d

12.

pEXPR: hEF1a-mKate

Low Sensor miR-125b

High Sensor miR-30d

Wild Type CAG-2xKturn-eGFP

siRNA-125b

13.

pEXPR: hEF1a-mKate

Low Sensor miR-125b

High Sensor miR-30d

Wild Type CAG-2xKturn-eGFP

siRNA-30d

siRNA-125b

//////

14.

pEXPR: hEF1a-mKate 

High Sensor miR-181c

Dummy DNA (2.9 uL = 1 fmoles)5

15.

pEXPR: hEF1a-mKate

Low Sensor miR-144

High Sensor miR-181c

Wild Type CAG-2xKturn-eGFP

16.

pEXPR: hEF1a-mKate

Low Sensor miR-144

High Sensor miR-181c

Wild Type CAG-2xKturn-eGFP

siRNA-181c

17.

pEXPR: hEF1a-mKate

Low Sensor miR-144

High Sensor miR-181c

Wild Type CAG-2xKturn-eGFP

siRNA-144

18.

pEXPR: hEF1a-mKate

Low Sensor miR-144

High Sensor miR-181c

Wild Type CAG-2xKturn-eGFP

siRNA-181c

siRNA-144

      


RESULT: Transfection efficiency ___%. Data can be found .

TAL14 Repression

GOAL: Test the strength of TAL14

44 complete 7/25/14: Seed cells 45 complete 7/26/14: Transfect MAV1212-hEF1a-eBFP2, TAL14-mKate, hEF1a-GAL4VP16, hEF1a-TAL14, and hEF1a-PirB (dummy DNA) at ~500 ng/uL into HEK cells 46 complete 7/28/14 (4 pm): Flow Cytometry

 

  • DNA Dilution: MAV1212-hEF1a-eBFP2 (0.47 uL), TAL14-mKate (0.62 uL), hEF1a-GAL4VP16 (0.72 uL), hEF1a-TAL14 (___ uL), Dummy DNA (to 1 ug)


24-WELL PLATE TRANSFECTION MAP:

1. (B)1

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Dummy DNA (2.5 fmoles = 0.76 uL)

2. (B)2

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Dummy DNA (2.5 fmoles = 0.76 uL)

////////////

//////

 

3. Neg Ctrl

Dummy DNA (3.2 fmoles = 2.05 uL)

With Lipofectamine

4. (B + R)1

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

Dummy DNA (2.0 fmoles = 0.61 uL)

5. (B + R)2

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

Dummy DNA (2.0 fmoles = 0.61 uL)

//////

////////////

6. Neg Ctrl

Dummy DNA (3.2 fmoles = 2.05 uL)

With Lipofectamine

7. (B + R + GAL)1

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.5 fmoles)

8. (B + R + GAL)2

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.5 fmoles)

//////

//////

 

//////

9. Neg/Neg Ctrl

No DNA

No Lipofectamine

10. (B + R + GAL)1

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.5 fmoles)

hEF1a-TAL14 (1.5 fmoles)

11. (B + R + GAL)2

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.5 fmoles)

hEF1a-TAL14 (1.5 fmoles)

//////

////////////12. Neg/Neg Ctrl

No DNA

No Lipofectamine

 

Results: Transfection efficiency ___%. Data can be found

 TAL14 Tuning

GOAL: Determine how much TAL14 is needed to repress TAL14-UAS-mKate

26 complete Day One: Seed cells 27 complete Day Two: Transfect MAV1212-hEF1a-eBFP2, TAL14-mKate, hEF1a-GAL4VP16, hEF1a-TAL14, and hEF1a-PirB (dummy DNA) at ~500 ng/uL into HEK cells 25 complete Day Four (12:30 pm): Flow Cytometry

 

  • DNA Dilution: MAV1212-hEF1a-eBFP2 (0.47 uL), TAL14-mKate (0.62 uL), hEF1a-GAL4VP16 (0.72 uL), hEF1a-TAL14 (0.22 uL = 1 fmol), Dummy DNA (to 1 ug)


24-WELL PLATE TRANSFECTION MAP:

1. 

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Dummy DNA (1.75 fmoles = 4.06 uL)

2. 

MAV1212-hEF1a-eBFP2 (1.0 fmole)

Dummy DNA (1.75 fmoles = 04.06 uL)

3.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

Dummy DNA (1.0 fmoles = 2.32 uL)

4.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

Dummy DNA (1.0 fmoles = 2.32 uL)

5.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.5 fmoles)

Dummy DNA (0.75 fmoles = 1.74 uL)

6.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.5 fmoles)

Dummy DNA (0.75 fmoles = 1.74 uL)

7.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (1.0 fmoles)

8.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (1.5 fmoles)

9.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (2.0 fmoles)

10.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (2.5 fmoles)

11.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (3.0 fmoles)

12.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (3.5 fmoles)

13.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (4.0 fmoles)

14.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (4.5 fmoles)

15.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (5.0 fmoles)

16.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (10.0 fmoles)

17.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (15.0 fmoles)

18.

MAV1212-hEF1a-eBFP2 (1.0 fmole)

UAS-TAL14-mKate (1.5 fmoles)

hEF1a-Gal4VP16 (1.0 fmoles)

hEF1a-TAL14 (20.0 fmoles)

19.

Dummy DNA (3.2 fmoles = 2.05 uL)

With Lipofectamine

20.

Dummy DNA (3.2 fmoles = 2.05 uL)

With Lipofectamine

21.

No DNA

No Lipofectamine

22.

No DNA

No Lipofectamine

  

RESULT: Transfection efficiency ___%. Data can be found here.

Toggle Cloak
Treatment

A3

  • Hef1a: eBFP 250ng
  • TRE: miRNA1-mKATE250ng
  • Hef1a: rtTA 250ng
    • Dummy DNA 250ng
    0 nM Dox

    A4

  • Hef1a: eBFP 250ng
    • TRE: miRNA1
    Cloak

    Testing effectiveness of miRNA1–miRNA4 in down-regulating BACE1 expression v1

    A1

      • Hef1a: eBFP 250ng
      • Dummy DNA 750ng


        Positive Control

    A2

      • Hef1a: eBFP 250ng
      • Hef1a: BACE1 250ng
      • Dummy DNA 500ng

    Negative Control

    A3

      • Hef1a: eBFP 250ng
      • TRE: miRNA1-mKATE250ng
      • Hef1a: rtTA 250ng
      • Dummy DNA 250ng

        0 nM Dox

    A4

      • Hef1a: eBFP 250ng
      • TRE: miRNA1-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng

    0 nM Dox

    A5

      • Hef1a: eBFP 250ng
      • TRE: miRNA1-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Dummy DNA 250ng

        1000 nM Dox

    A6

      • Hef1a: eBFP 250ng
      • TRE: miRNA1-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng

    1000 nM Dox

    A7

    • Hef1a:mKATE 250ng
    • Hef1a:BFP 250ng
    • Dummy DNA 500ng
    		     
          
          

    Testing inducible expression of BACE2

    B1

    • Hef1a:eBFP 333ng
    • Dummy DNA 666ng

    Negative Control

    B2

    • Hef1a:eBFP 333ng
    • Hef1a:rtTA 333ng
    • TRE:BACE2 333ng

    0 nM Dox

    B3

    • Hef1a:eBFP 333ng
    • Hef1a:rtTA 333ng
    • TRE:BACE2 333ng

    1000 nM Dox

    B4

    • No DNA (untransfected)

     

    Double negative control

    		  
          
          
          

    Transfection: Week of 8/11

    A1

      • Hef1a: eBFP 250ng
      • Dummy DNA 750ng



    Negative BACE1 Control

    A2

      • Hef1a: eBFP 250ng
      • Hef1a: BACE1 250ng
      • Dummy DNA 500ng

     

    Positive BACE1 Control

     A3

      • Hef1a:mKATE 250ng
      • Hef1a:BFP 250ng
      • Dummy DNA 500ng

     

    mKATE control

    A4

      • Hef1:miRNAg1 250ng
      • Hef1a:BFP 250ng
      • Dummy DNA 500ng

     

    miRNA1g control

    A5

      • Hef1a: eBFP 250ng
      • TRE: miRNA1-mKATE250ng
      • Hef1a: rtTA 250ng
      • Dummy DNA 250ng

        0 nM Dox

    A6

      • Hef1a: eBFP 250ng
      • TRE: miRNA1-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng

    0 nM Dox

    A7

      • Hef1a: eBFP 250ng
      • TRE: miRNA1-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Dummy DNA 250ng

        1000 nM Dox

    A8

      • Hef1a: eBFP 250ng
      • TRE: miRNA1-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng

    1000 nM Dox

    A9

      • Hef1a: eBFP 250ng
      • TRE: miRNA2-mKATE250ng
      • Hef1a: rtTA 250ng
      • Dummy DNA 250ng

        0 nM Dox

    A10

      • Hef1a: eBFP 250ng
      • TRE: miRNA2-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng

    0 nM Dox

    A11

      • Hef1a: eBFP 250ng
      • TRE: miRNA2-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Dummy DNA 250ng

        1000 nM Dox

    A12

      • Hef1a: eBFP 250ng
      • TRE: miRNA2-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng

    1000 nM Dox

    A13

      • Hef1a: eBFP 250ng
      • TRE: miRNA3-mKATE250ng
      • Hef1a: rtTA 250ng
      • Dummy DNA 250ng

        0 nM Dox

    A14

      • Hef1a: eBFP 250ng
      • TRE: miRNA3-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng

    0 nM Dox

    A15

      • Hef1a: eBFP 250ng
      • TRE: miRNA3-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Dummy DNA 250ng

        1000 nM Dox

    A16

      • Hef1a: eBFP 250ng
      • TRE: miRNA3-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng

    1000 nM Dox

    A17

      • Hef1a: eBFP 250ng
      • TRE: miRNA4-mKATE250ng
      • Hef1a: rtTA 250ng
      • Dummy DNA 250ng

        0 nM Dox

    A18

      • Hef1a: eBFP 250ng
      • TRE: miRNA4-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng

    0 nM Dox

    A19

      • Hef1a: eBFP 250ng
      • TRE: miRNA4-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Dummy DNA 250ng

        1000 nM Dox

    A20

      • Hef1a: eBFP 250ng
      • TRE: miRNA4-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng

    1000 nM Dox

    B1

      • Hef1a:eBFP 333ng
      • Dummy DNA 666ng

     

    Negative Control

    B2

      • Hef1a:eBFP 333ng
      • Hef1a:rtTA 333ng
      • TRE:BACE2 333ng

     

    0 nM Dox

    B3

      • Hef1a:eBFP 333ng
      • Hef1a:rtTA 333ng
      • TRE:BACE2 333ng

     

    1000 nM Dox

    B4

      • No DNA (untransfected)

     

     

    Double negative control

     Transfection 9/17

     

    A1

      • Hef1a: eBFP 250ng
      • Dummy DNA 750ng



    Negative BACE1 Control

    A2

      • Hef1a: eBFP 250ng
      • Hef1a: BACE1 250ng
      • Dummy DNA 500ng

     

    Positive BACE1 Control

     A3

      • Hef1a:mKATE 250ng
      • Hef1a:BFP 250ng
      • Dummy DNA 500ng

     

    mKATE control

    A4

      • Hef1a: eBFP 250ng
      • TRE: miRNA1-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng

    0 nM Dox

     

    A5

      • Hef1a: eBFP 250ng
      • TRE: miRNA1-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng

    1000 nM Dox

    		 A6
      • Hef1a: eBFP 250ng
      • TRE: miRNA2-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng

    0 nM Dox

    A7

      • Hef1a: eBFP 250ng
      • TRE: miRNA2-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng

    1000 nM Dox

    A8

      • Hef1a: eBFP 250ng
      • TRE: miRNA3
    Cloak
    Testing effectiveness of miRNA1–miRNA4 in down-regulating BACE1 expression v1

    A1

  • Hef1a: eBFP 250ng
    • Dummy DNA 750ng
    Positive Control

    A2

      • Hef1a: eBFP 250ng
      • Hef1a: BACE1 250ng
      • Dummy DNA 500ng

    Negative Control

      • -mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng

    0 nM Dox

    A5

     A9

      • Hef1a: eBFP 250ng
      • TRE:
    miRNA1
      • miRNA3-mKATE
    250ngDummy DNA
      • 250ng
      • Hef1a: rtTA
    250ng
      • 250ng
      • Hef1a: BACE1
      • 250ng

    1000 nM Dox

    A6

    A10

      • Hef1a: eBFP 250ng
      • TRE:
    miRNA1
      • miRNA4-mKATE 250ng
      • Hef1a: rtTA 250ng
      • Hef1a: BACE1 250ng
    1000

    0 nM Dox

    A7

    A11

      • Hef1a: eBFP 250ng
      • TRE: miRNA4-mKATE 250ng
      • Hef1a:
    BFP
      • rtTA 250ng
  • Dummy DNA 500ng
    •                  Testing inducible expression of BACE2
      • Hef1a: BACE1 250ng

    1000 nM Dox

     

    B1

      • Hef1a:eBFP 333ng
      • Dummy DNA 666ng

     

    Negative Control

    B2

      • Hef1a:eBFP 333ng
      • Hef1a:rtTA 333ng
      • TRE:BACE2 333ng

     

    0 nM Dox

    B3

      • Hef1a:eBFP 333ng
      • Hef1a:rtTA 333ng
      • TRE:BACE2 333ng

     

    1000 nM Dox

    		 B4
      • No DNA (untransfected)

     

    Double negative control